Glycobiology Advance Access originally published online on September 16, 2008
Glycobiology 2008 18(12):1065-1073; doi:10.1093/glycob/cwn089
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Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1
2 Department of Endocrinology, Faculty of Medicine
3 Division of Structural Biology, Life Science Research Center, Kagawa University, Kagawa 761-0793
4 Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba Central 2, 1-1-1, Umezono, Tsukuba, Ibaraki 305-8568
5 GalPharma Co., Ltd., 2217-44 Hayashimachi, Takamatsu, Kagawa 761-0301, Japan
1 To whom correspondence should be addressed: Tel: +81-87-891-2107; Fax: +81-87-891-2108; e-mail: nnishi{at}med.kagawa-u.ac.jp
Received on April 24, 2008; revised on September 12, 2008; accepted on September 12, 2008
| Abstract |
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Galectin-1 (Gal-1), a member of the β-galactoside-binding animal lectin family, has a wide range of biological activities, which makes it an attractive target for medical applications. Unlike other galectins, Gal-1 is susceptible to oxidation at cysteine residues, which is troublesome for in vitro/vivo studies. To overcome this problem, we prepared a cysteine-less mutant of Gal-1 (CSGal-1) by substituting all cysteine residues with serine residues. In the case of wild-type Gal-1, the formation of covalent dimers/oligomers was evident after 10 days of storage in the absence of a reducing agent with a concomitant decrease in hemagglutination activity, while CSGal-1 did not form multimers and retained full hemagglutination activity after 400 days of storage. Frontal affinity chromatography showed that the sugar-binding specificity and affinity of Gal-1 for model glycans were barely affected by the mutagenesis. Gal-1 is known to induce cell signaling leading to an increase in the intracytoplasmic calcium concentration and to cell death. CSGal-1 is also capable of inducing calcium flux and growth inhibition in Jurkat cells, which are comparable to or more potent than those induced by Gal-1. The X-ray structure of the CSGal-1/lactose complex has been determined. The structure of CSGal-1 is almost identical to that of wild-type human Gal-1, showing that the amino acid substitutions do not affect the overall structure or carbohydrate-binding site structure of the protein. These results indicate that CSGal-1 can serve as a stable substitute for Gal-1.
Key words: galectin / site-directed mutagenesis / thiol oxidation / X-ray crystallography
| Introduction |
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Galectins comprise a phylogenetically conserved family of animal lectins defined by an affinity for β-galactosides and conserved sequence elements in the carbohydrate-binding site (Barondes et al. 1994
In addition to its diverse biological roles as a lectin, oxidized Gal-1 with three intramolecular disulfide bonds, which lacks lectin activity, has been shown to promote axonal regeneration in peripheral nerves after axotomy (Horie et al. 1999
; Inagaki et al. 2000
). Oxidized Gal-1 is supposed to exert its action through stimulation of macrophages to secrete a factor that promotes axonal growth and Schwann cell migration (Horie et al. 2004
). The authors also showed that an artificial mutant of Gal-1 (CSGal-1) in which all six cysteine residues were replaced by serine residues was resistant to oxidation in the absence of a reducing agent and inactive in promoting axonal regeneration (Inagaki et al. 2000
). This cysteine-less Gal-1 molecule is a promising candidate for an oxidation-resistant stable substitute for Gal-1 for both in vitro and in vivo applications provided that the mutation does not change the sugar-binding specificity, and thus does not affect the biological activity as a lectin. Detailed characterization of CSGal-1, however, has not been reported until now. The aim of this study was to establish CSGal-1 as a long-standing agent essentially equivalent to wild-type Gal-1, except for oxidation-dependent acquisition of neurotrophic activity, by means of biochemical, cell biological and crystallographic analyses.
| Results |
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Stability of the wild-type and mutant forms of Gal-1
The wild-type Gal-1 and CSGal-1 were subjected to long-term stability testing. Another mutant form of Gal-1, Gal-1Cys3Ser (Gal-1C3S), was also tested and compared with Gal-1 and CSGal-1 because the C3S mutation had been reported to greatly increase the stability of Gal-1 (Hirabayashi and Kasai 1991
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Sugar-binding specificity of CSGal-1
We previously examined the sugar-binding specificity of Gal-1 in comparison with those of other galectins by frontal affinity chromatography (FAC) analysis using 41 pyridylaminated-oligosaccharides (PA-oligosaccharides) (Hirabayashi et al. 2002
2-6 Sialylation completely abolished the affinity. (iii) Other than basic saccharides, Gal-1 showed affinity for Galili pentasaccharide, lacto-N-fucopentaose I (LNFP-I) and A-hexasaccharide. (iv) Gal-1 did not show any particular preference for repeated N-acetyllactosamine structures. These results are consistent with our previous report (Hirabayashi et al. 2002
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Biological activity of CSGal-1
Gal-1 is known to act as a mitogen, as an inhibitor of cell proliferation, and as a promoter of apoptosis depending on the cell type and assay conditions (Scott and Weinberg 2004
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Binding specificity of CSGal-1 for membrane glycoproteins
A variety of binding partners for Gal-1, including cell membrane proteins and extracellular matrix proteins, have been reported in conjunction with its multiple biological roles (Elola et al. 2005
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X-ray structure of the CSGal-1/lactose complex
There are two molecules (Mol-A and Mol-B) of CSGal-1 in an asymmetric unit, a homo-dimer being formed. In Ramachandran plots (Ramachandran and Sasisekharan 1968
of Ser replacing Cys).
The monomer of CSGal-1 adopts a β-sandwich structure formed by two antiparallel β-sheets consisting of six (S1-S6) and five (F1-F5) β-strands, respectively, and on dimerization, pairs of the same β-sheets are connected to give two large antiparallel β-sheets, as shown in Figure 6A. The nomenclature for β-strands follows that for wild-type human Gal-1, the β-strands being aligned in the sequence of S1, F2, S3, S4, S5, S6a/S6b, F3, F4, F5, S2 and F1 from the N- to the C-terminus (Lopez-Lucendo et al. 2004
). The carbohydrate-binding sites are located at the ends of a dimer. However, for the CSGal-1/lactose complex structure, the electron density of the bound lactose molecule of Mol-A can be clearly identified at the carbohydrate-binding site, while there is no corresponding electron density for Mol-B. This may be due to a crystal packing effect, as discussed later. A lactose molecule binds to the concave surface formed by S4, S5, and S6 in Mol-A, as shown in Figure 6B. The galactose moiety is fixed between His53 and Trp69 through stacking interactions and is strictly recognized as seven hydrogen bonds with amino acid residues: O-2–His53, O-4–His45, O-4–Asn47, O-4–Arg49, O-5–Arg49, O-6–Asn62 and O-6–Glu72. On the other hand, in the glucose moiety, only the O-3 atom makes two hydrogen bonds with Arg49 and Glu72, and the reducing end side of the glucose moiety is extensively exposed on the solvent accessible surface.
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There are six Ser residues replacing Cys residues, as shown in Figure 6A. Ser3 in the N-terminal loop, Ser17 in F2, Ser89 in F3, and Ser 131 in F1 direct their side-chain groups toward the outside of the protein, forming many hydrogen bonds with solvent molecules, and Ser43 in S4 and Ser61 in S5 direct their side-chain groups toward the inside of the protein, being surrounded by hydrophobic residues, like the Cys residues in wild-type human Gal-1. Almost all the Ser residues adopt the same side-chain conformation as the Cys residues, except Ser16 in Mol-A and Ser43 in both molecules, where hydrogen bonds are newly found: Ser17 (O
), Thr90 (O
) in Mol-A and Ser43 (O
), solvent molecule in both molecules. | Discussion |
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All Gal-1 characterized in mammals contains six conserved cysteine residues. Spontaneous intramolecular disulfide bonding of the cysteine residues occurs predominantly between Cys3 and Cys131, Cys17 and Cys89, and Cys43 and Cys61 under oxidative conditions (Tracey et al. 1992
Lopez-Lucendo et al. (2004
) reported that the C2S mutation (designated as the C3S mutation in the present paper) affects the sugar-binding property of Gal-1. In their crystallographic study on the wild-type and mutant Gal-1, two single mutations (C2S and R111H) introduced at some distance from the carbohydrate recognition motif were found to influence the interactions with lactose and N-acetyllactosamine. They argued that this effect revealed the occurrence of long-range alterations in the Gal-1 conformation. It is possible that all the Cys-to-Ser mutations including the C3S mutation have minor effects on the folding of Gal-1. It has been established, based on site-directed mutagenesis and X-ray crystallographic studies, that the eight most conserved amino acid residues in the galectin family (His45, Asn47, Arg49, Val60, Asn62, Trp69, Glu72, and Arg74 of human Gal-1) undergo direct interaction with the sugar molecule, i.e., they form sugar-binding sites. Two out of the six cysteine residues of Gal-1 (Cys43 and Cys61) are located in close proximity to the sugar-binding sites, and thus substitution of these cysteine residues may affect the interaction between Gal-1 and sugar chains. Analysis of the sugar-binding properties of Gal-1 and CSGal-1 by FAC in the present study, however, clearly showed that CSGal-1 has essentially the same sugar-binding specificity and affinity as Gal-1. These results suggest that the effect, if any, of the Cys-to-Ser mutations does not substantially alter the oligosaccharide-Gal-1 interactions in solution.
The observation that Gal-1 could induce apoptosis in activated T lymphocytes has established Gal-1 as a novel proapoptotic factor, although the activity was demonstrated with relatively high concentrations (Perillo et al. 1995
). In addition to activated T lymphocytes, several T-cell lines including Jurkat T-cells are susceptible to Gal-1-induced apoptosis/cell death. In Jurkat cells, Gal-1 augments rapid intracellular calcium mobilization, which is sensitive to lactose and N-glycan processing inhibitors, through transient release from intracellular stores and an altered influx across the plasma membrane (Walzel et al. 2000
). Although it is not clear whether calcium flux is a prerequisite for Gal-1-induced cell death in Jurkat cells, calcium-mobilizing activity can serve as an indication of the biological activity of Gal-1 in whole cells. Recently, Cummings and his colleagues demonstrated that Gal-1 induces apoptosis in MOLT-4 cells only in the presence of DTT (Stowell et al. 2007
). They suggested that Gal-1-induced apoptosis in the presence of DTT results from alterations in cellular physiology and not a requirement to preserve Gal-1 activity under oxidative conditions, although the precise mechanism is unclear. We compared the effects of Gal-1 and CSGal-1 on the growth of Jurkat cells both in the presence and absence of DTT in addition to their calcium-mobilizing activities to assess the influence of the Cys-to-Ser mutations. CSGal-1 induced calcium flux to a level comparable to that induced by Gal-1, and the activity remained almost unchanged after 400 days of storage, which is consistent with the results of the stability test. Gal-1 and CSGal-1 suppressed the growth of Jurkat cells in the presence of DTT and the effect of CSGal-1 was significantly higher than that of Gal-1. It is possible that partial oxidation of Gal-1 occurs during 24 h incubation in the culture medium, even in the presence of DTT. The oxidative inactivation of Gal-1 may partly explain the difference. The growth-inhibiting effect of Gal-1 was not observed in the absence of DTT in accordance with the results of Stowell et al. However, in the case of CSGal-1, the growth-inhibiting activity was hardly affected by omission of DTT. The role of DTT in Gal-1-induced apoptosis (i.e., alterations in cellular physiology) was hypothesized based on the observations that C2S-Gal-1 (designated as Gal-1C3S in the present paper) induced apoptosis of MOLT-4 cells in the presence, but not in the absence, of DTT and that glutathione, a cell-impermeable reducing agent, could not substitute for DTT in supporting the apoptosis-inducing activity of Gal-1 (Stowell et al. 2007
). Although C2S-Gal-1/Gal-1C3S was used as an oxidation-resistant mutant of Gal-1 in their study, Gal-1C3S is not stable under oxidative conditions, as shown in Figure 1 and Table I. In addition, it is not clear whether glutathione can protect Gal-1 against oxidation as effectively as DTT in the cell culture medium. The present finding, i.e., CSGal-1 suppressed the growth of Jurkat cells in the absence of DTT, suggests that Gal-1 exhibits intrinsic growth-inhibiting activity toward at least some cell types. Nevertheless, we do not exclude the possibility that the Cys-to-Ser mutations modify the biological activity of Gal-1, and therefore the results obtained using CSGal-1 as a substitute for wild-type Gal-1 should be carefully interpreted.
FAC analysis revealed that the Cys-to-Ser mutations hardly affected the sugar-binding properties of Gal-1. As the analysis was carried out using model oligosaccharides, it cannot be ruled out that the mutations affect the interaction of Gal-1 with oligosaccharide chains attached to glycoproteins including Gal-1 receptors. Affinity isolation of Gal-1/CSGal-1 interacting proteins from solubilized Jurkat cell membrane showed that Gal-1 and CSGal-1 could interact with membrane glycoproteins in closely similar manners. Although quantitative data cannot be obtained by the method used (affinity purification), the biological activities of Gal-1 and CSGal-1 suggest that CSGal-1 can properly interact with the oligosaccharide moieties of Gal-1 receptor glycoproteins.
The rms deviation for C
atoms is 0.41 Å between CSGal-1 and wild-type human Gal-1 (PDB code 1GZW), and the interactions between the proteins and the bound lactose molecule in Mol-A are equivalent to each other. The displacement of C
atoms of the Ser residues replacing Cys residues are in the rage of 0.130–0.791 Å, the mean being 0.396 Å, and the maximum C
atom displacement of 2.25 Å was found for Glu116 of Mol-B, it being 27 Å from the carbohydrate-binding site. Therefore, the substitution of the six Cys residues with Ser residues did not affect the overall structure or the carbohydrate-binding site structure of the protein, although a few hydrogen bonds with Ser17 and Ser43 are newly found in CSGal-1. In the crystal structure of CSGal-1, a lactose molecule is not found in Mol-B. The least-square fit of Mol-A with the lactose bound to Mol-B showed that the lactose molecule superimposed on Mol-B possibly interacts with the amino acid residues in the same manner as in the case of Mol-A. The rms deviation for C
atoms of carbohydrate-binding residues, His45, Asn47, Arg49, His53, Asn62, Trp69, and Glu72, is 0.37 Å, and the side-chain conformations of the residues are the same in Mol-A and Mol-B. However, in a crystal, the carbohydrate-binding site of Mol-B is partially occupied by the amino acid residues of the symmetry-operated molecule, and the superimposed lactose molecule makes slightly unusual contacts with Asn51 (3.2 Å, C-6 – O
1) and Ala56 (2.9 Å, O-6 – Cβ) of the symmetry operated Mol-A. It is expected that the bound lactose molecule in Mol-B is likely released from the protein in the process of crystallization. In the wild-type human Gal-1, the bound lactose molecules are found in both Mol-A and Mol-B (Lopez-Lucendo et al. 2004
). This is because the two crystal structures are slightly different from each other: P212121, a = 36.93, b = 87.43, c = 95.70 Å for CSGal-1 and P212121, a = 36.98, b = 88.81, c = 93.94 Å for the wild-type human Gal-1, giving different intermolecular contacts between two crystals. In the crystal of the wild-type human Gal-1, the symmetry-operated Mol-A does not make any unusual contacts with the bound lactose molecule in Mol-B. The maximum displacement of the C
atom of Glu116 of Mol-B is also caused by the different intermolecular contacts. In CSGal-1, Glu116 of Mol-B forms van der Waals contacts with Pro78, Phe79, and Gln80 of symmetry-operated Mol-B, while in the wild-type human Gal-1, it undergoes the solvent-mediated interactions with the symmetry-operated Mol-B. This may be due not to the difference in the protein structure but to that in the crystallization conditions: pH = 7.0 for CSGal-1 and pH = 5.6 for the wild-type human Gal-1.
The present study was undertaken to establish CSGal-1, the potential advantage of which was first reported by Inagaki et al. (2000
), as a long-standing substitute for wild-type Gal-1. The results obtained on biochemical, cell biological, and crystallographic analyses led to the conclusion that CSGal-1 can be an excellent substitute for Gal-1 as a lectin for both basic research and clinical applications. It may be interesting to conduct knock-in experiments with CSGal-1 to evaluate the biological significance of the oxidation-dependent acquisition of the neurotrophic activity of Gal-1.
| Material and methods |
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Construction of expression vectors
In the present paper, the amino-terminal methionine residue corresponding to the start codon, which is known to be removed from the naturally occurring Gal-1 molecule, is assigned as residue 1. The following forward (F) and reverse (R) primers were used to amplify the cDNAs for the wild-type and site-directed mutants of galectin-1:
- G1-F1, 5'-CGTCCTCATATGGCTTGTGGTCTGGTCGC C-3';
- G1-R1, 5'-CGACCGGGATCCTCAGTCAAAGGCCACA CATTT-3';
- G1C3S-F1, 5'-CGTCCTCATATGGCTAGCGGTCTGGT CGCCAGC-3';
- G1CS-F1, 5'-CGTCCTCATATGGCTAGCGGTCTGGTC GCCAGCAACCTGAATCTCAAACCTGGAGAGAGCC TT-3';
- G1CS-R1, 5'-CGACCGCTCGAGTCAGTCAAAGGCCA CGCTTTT-3';
- G1CS-F2, 5'-AACCTGAGCCTGCACTTCAACCCTCG CTTCAACGCCCACGGCGACGCCAACACCATCGTG AGCAACAGC-3';
- G1CS-R2, 5'-GCTGTTGCTCACGATGGTGTTGGCGT CGCCGTGGGCGTTGAAGCGAGGGTTGAAGTGCAG GCTCAGGTT-3';
- G1CS-F3, 5'-GCAGAGGTGAGCATCACCTTCGAC-3';
- G1CS-R3, 5'-GTCGAAGGTGATGCTCACCTCTGC-3';
- G1-R1, 5'-CGACCGGGATCCTCAGTCAAAGGCCACA CATTT-3';
The cDNAs for human Gal-1 and a mutant Gal-1 carrying a single mutation (Cys3Ser) were amplified from first-strand cDNA prepared from the poly (A)+RNA fraction of the Jurkat T-lymphocytic cell line by polymerase chain reaction (PCR) using a forward primer tagged with an extra 5' NdeI sequence (G1-F1/G1C3S-F1) and a reverse primer tagged with an extra BamHI sequence (G1-R1). The amplified cDNAs were digested with NdeI and BamHI, and then inserted into the NdeI-BamHI sites of pET-11a (Stratagene, La Jolla, CA). Site-directed mutagenesis of all cysteine residues (Cys3, 17, 43, 61, 89, and 131) of Gal-1 to serine residues was carried out as follows: in two separate reactions, two overlapping cDNA fragments corresponding to the N- and C-terminal halves of G1 were amplified using G1CS-F1 (with C3, 17S mutations) + G1CS-R2 (with C43, 61S mutations), and G1CS-F2 (with C43, 61S mutations) + G1CS-R1 (with a C131S mutation). The amplified fragments were then mixed and subjected to a second round of PCR using G1CS-F1 + G1CS-R1 to generate a full-length cDNA with five point mutations (C3, 17, 43, 61, and 131S). The amplified cDNA was digested with NdeI and BamHI, and then inserted into the NdeI-BamHI sites of pET-11a. The last mutation (Cys89Ser) was introduced by means of essentially the same procedure using G1CS-R3 and G1CS-F3 as internal primers, and the plasmid prepared in the previous step as a target. The amplified cDNA carrying all the mutations was digested with NdeI and BamHI, and then inserted into the NdeI–BamHI sites of pET-11a. The DNA sequences of all the expression vectors were confirmed by automated sequencing.
Expression and purification of recombinant proteins
Expression of tag-free recombinant proteins in E. coli BL21(DE3) cells was carried out as described previously (Lu et al. 2007
). Recombinant proteins were purified by affinity chromatography on a lactose-agarose column (Seikagaku Co., Tokyo, Japan). The affinity-purified proteins were dialyzed against phosphate-buffered saline (PBS) and then sterilized by filtration unless otherwise specified. The protein concentrations were determined using BCA protein assay reagent (Pierce Biotechnology, Inc., Rockford, IL) and bovine serum albumin as a standard.
Hemagglutination assays
Hemagglutination activity was assessed by the method of Nowak et al. (1976
). Briefly, assay samples were prepared by serial twofold dilution of recombinant proteins in a 96-well microtiter plate. After the addition of bovine serum albumin and glutaraldehyde-fixed trypsin-treated rabbit erythrocytes to final concentrations of 0.25% (w/v) and 1% (v/v), respectively, the reaction mixture was incubated for 1 h at room temperature. The minimum concentration required for hemagglutination was visually determined.
Frontal affinity chromatography
The interactions between Gal-1/CSGal-1 and PA-oligosaccharides were studied by FAC. The recombinant proteins dissolved in 0.1 M NaHCO3 (pH8.3), 0.5 M NaCl were coupled to NHS-activated Sepharose 4 Fast Flow following the manufacturer's instructions. The galectin-immobilized Sepharose beads were packed into a stainless steel column (4 x 10 mm). Determination of the elution volume of the analyte and calculation of the Kd value were carried out as described previously (Nakamura-Tsuruta et al. 2006
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Cell culture and cell proliferation assay
The Jurkat T-cell line was obtained from the American Type Culture Collection (Manassas, VA). The cells were cultured in RPMI-1640 medium supplemented with 10% FBS, 100 mU/ mL penicillin, and 100 µg/mL streptomycin at 37°C under a 5% CO2–95% air atmosphere. The antiproliferative effect on the Jurkat T-cell line was determined by means of the WST-8 assay. Jurkat cells (5 x 104 cells in 90 µL of medium/well) were plated on 96-well plates, and then cultured for 2 h. Test samples were added at various concentrations, and then the cultures were continued for 24 h. In some experiments, DTT was added to the culture medium with test samples at a final concentration of 1 mM. WST-8 reagent (Cell Counting Kit-8; Dojin Laboratories, Kumamoto, Japan) was added to the culture medium (10 µL/well), followed by incubation for 2 h. Each assay was performed in triplicate. Using an enzyme-linked immunoadsorbent assay autoreader, the viable cell number was determined by measuring the difference between the absorbance at 450 and that at 620 nm.
Ca2+ mobilization assay
Calcium mobilization in Jurkat cells was determined by using Calcium Kit-Fluo3 (Dojin Laboratories). Jurkat cells were washed with PBS and then loaded with fluo-3-AM for 1 h at 37°C. After washing with a recording medium, the cells were suspended in a fresh recording medium. Cytosolic calcium was monitored as the fluorescence of fluo-3 using a fluorescence spectrophotometer.
Affinity purification of Gal-1/CSGal-1-interacting proteins from solubilized Jurkat cell membrane
Jurkat cells washed with PBS were suspended in 10 mM Tris–HCl (pH 7.5), 1 mM phenylmethylsulfonyl fluoride (PMSF) (4 x 108 cells/40 mL), followed by a single freeze-thaw cycle and sonication. The total membrane fraction was isolated by centrifugation at 50,000 x g for 30 min, and then washed sequentially with 20 mM Tris–HCl (pH 7.5), 0.15 M NaCl, 0.1 M lactose (TBS/lactose), and TBS to remove intrinsic galectins. The washed membrane fraction was homogenized with 20 mM Tris–HCl (pH 7.5), 0.5 M NaCl, 1% Triton X-100, 1 mM PMSF using a Teflon-glass homogenizer. After incubation for 1 h at 4° C with stirring, the homogenate was centrifuged as above. The resulting supernatant (solubilized membrane fraction) was subjected to affinity purification on a Gal-1/CSGal-1-immobilized column (about 4 mg of recombinant protein immobilized on 1 mL of HiTrap NHS-activated Sepharose). After washing the column with TBS, 0.2 M sucrose, Gal-1/CSGal-1-interacting proteins were eluted with TBS, 0.2 M lactose.
| Western blot analysis |
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Samples were subjected to SDS–PAGE on 10% (for detection of CD43 and CD45) or 12.6% (CD2, CD3 and CD7) gels. The separated proteins were transferred to polyvinylidene difluoride membranes (Millipore Co., Billerica, MA), followed by immunodetection with monoclonal antibodies against human CD2 (MT210), CD3 (UCH-T1), CD7 (H-126), CD43 (DF-T1) (Santa Cruz Biotechnology, Santa Cruz, CA), and human CD45 (Chemicon International Inc., Temecula, CA), and phosphatase-labeled goat anti-mouse IgG antibodies (Kirkegaard and Perry Laboratories, Inc., Gaithersburg, MD), as described previously (Nishi et al. 1995
X-ray structure determination
Crystallization of the CSGal-1/lactose complex was performed based on the conditions for human Gal-1 (Lopez-Lucendo et al. 2004
). A suitable-sized crystal of the CSGal-1/lactose complex was grown by the vapor diffusion method in a drop comprising equal volumes of the protein solution (10 mg/mL protein, 20 mM phosphate buffer (pH 7.0), 5 mM lactose) and the reservoir solution (2.0 M ammonium sulfate). Data collection was carried out using synchrotron radiation at SPring-8 (Harima, Japan) and the Photon Factory (Tsukuba, Japan), and the data used for structure determination were collected with an ADSC Quantum 4R CCD detector system on the BL-6A in the Photon Factory. The collected data were processed using the program HKL2000 (Otwinowski and Minor 1997
). The collected data statistics are listed in Table II. The structure of the CSGal-1/lactose complex was determined by a molecular replacement method with the program CNS (Brunger et al. 1998
), using the structure of human Gal-1 (PDB code 1GZW) as a search model. Further model building was performed with the program X-fit (McRee 1999
), and the structure was refined using the program CNS (Brunger et al. 1998
). Water molecules were gradually introduced if the peaks above 4.0
in the (Fo – Fc) electron density map were in the range of a hydrogen bond. After several cycles of positional and temperature factor refinements, a model was refined to a Rcryst of 0.218 with a good chemical geometry, as listed in Table II. The atomic coordinates and structure factors for the CSGal-1/lactose complex have been deposited in the Protein Data Bank under accession code 2ZKN.
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| Supplementary Data |
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Supplementary data for this article is available online at http://glycob.oxfordjournals.org/.
| Funding |
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This study was supported in part by the National Project on Protein Structural and Functional Analyses from the Ministry of Education, Culture, Sports, Science and Technology of Japan.
| Conflict of interest statement. |
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None declared.
| Acknowledgements |
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The data collection was performed with the approval of the Photon Factory Advisory Committee, and SPring-8.
| Abbreviations |
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CSGal-1, galectin-1·Cys3,17,43,61,89,131Ser; DTT, dithiothreitol; FAC, frontal affinity chromatography; Gal-1, galectin-1; LNFP-I, lacto-N-fucopentaose I; PA-oligosaccharides, pyridylamino-oligosaccharides; PMSF, phenylmethylsulfonyl fluoride; SDS–PAGE, sodium dodecyl sulfate–polyacrylamide gel electrophoresis
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